# Publications Search Within Results Search Within Results search ## 111 results Show filters filter\_alt Sort by Year of PublicationAlphabetical A-Z sort ## 111 results Download 111 citations download- [BibTeX](/node/748756/export?format=bibtex) - [EndNote X3 XML](/node/748756/export?format=endnote8) - [EndNote 7 XML](/node/748756/export?format=endnote7) - [Endnote tagged](/node/748756/export?format=tagged) - [Marc](/node/748756/export?format=marc) - [PubMedId](/node/748756/export?format=pubmed_id) - [RIS](/node/748756/export?format=ris) ### 2025 Paine, A. W.; Garmann, R. F.; Manoharan, V. N. [Extracellular Uncoating of Bacteriophage MS2](/publication/extracellular-uncoating-bacteriophage-ms2). *Journal of Molecular Biology* **2025**, *in press*. https://doi.org/10.1016/j.jmb.2025.169316. Paine, A. W.; Garmann, R. F.; Manoharan, V. N. [Extracellular Uncoating of Bacteriophage MS2](/publication/extracellular-uncoating-bacteriophage-ms2). *Journal of Molecular Biology* **2025**, *in press*. https://doi.org/10.1016/j.jmb.2025.169316. - add\_circle\_outline do\_not\_disturb\_on Abstract - [ downloadPublisher's version](https://www.sciencedirect.com/science/article/pii/S0022283625003821) In the early stages of infection of its host, Escherichia coli, bacteriophage MS2 sheds its icosahedral protein capsid, after which the single-stranded genomic RNA (gRNA) and maturation protein enter the cell as a complex. Although the steps preceding... - [ downloadPublisher's version](https://www.sciencedirect.com/science/article/pii/S0022283625003821) Tavera-Vázquez, A.; Montalvan-Sorrosa, D.; Perez-Lemus, G. R.; Rodriguez-Lopez, O. E.; Martinez-Gonzalez, J. A.; Manoharan, V. N.; de Pablo, J. J. [Microplate Active Migration Emerging From Light-Induced Phase Transitions in a Nematic Liquid Crystal](/publication/microplate-active-migration-emerging-light-induced-phase-transitions-nematic-liquid). *Advanced Functional Materials* **2025**, *35* (30). https://doi.org/10.1002/adfm.202504046. Tavera-Vázquez, A.; Montalvan-Sorrosa, D.; Perez-Lemus, G. R.; Rodriguez-Lopez, O. E.; Martinez-Gonzalez, J. A.; Manoharan, V. N.; de Pablo, J. J. [Microplate Active Migration Emerging From Light-Induced Phase Transitions in a Nematic Liquid Crystal](/publication/microplate-active-migration-emerging-light-induced-phase-transitions-nematic-liquid). *Advanced Functional Materials* **2025**, *35* (30). https://doi.org/10.1002/adfm.202504046. - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's version](https://onlinelibrary.wiley.com/doi/abs/10.1002/adfm.202504046) Achieving precise control over the diverse equilibrium configurations and corresponding optical textures of motile liquid crystals (LCs) in response to a wide range of external stimuli is a formidable challenge. This complexity becomes even more... - [ descriptionPublisher's version](https://onlinelibrary.wiley.com/doi/abs/10.1002/adfm.202504046) Chiang, T. K.; Kimchi, O.; Dhaliwal, H. K.; Villarreal, D. A.; Vasquez, F. F.; Manoharan, V. N.; Brenner, M. P.; Garmann, R. F. [Measuring Intramolecular Connectivity in Long RNA Molecules Using Two-Dimensional DNA Patch–probe Arrays](/publication/measuring-intramolecular-connectivity-long-rna-molecules-using-two-dimensional-dna). *Nucleic Acids Research* **2025**, *53* (11). https://doi.org/10.1093/nar/gkaf469. Chiang, T. K.; Kimchi, O.; Dhaliwal, H. K.; Villarreal, D. A.; Vasquez, F. F.; Manoharan, V. N.; Brenner, M. P.; Garmann, R. F. [Measuring Intramolecular Connectivity in Long RNA Molecules Using Two-Dimensional DNA Patch–probe Arrays](/publication/measuring-intramolecular-connectivity-long-rna-molecules-using-two-dimensional-dna). *Nucleic Acids Research* **2025**, *53* (11). https://doi.org/10.1093/nar/gkaf469. - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's version](https://academic.oup.com/nar/article/53/11/gkaf469/8158033) We describe a DNA-array-based method to infer intramolecular connections in a population of RNA molecules in vitro. First we add DNA oligonucleotide “patches” that perturb the RNA connections, and then we use a microarray containing a complete set of DNA... - [ descriptionPublisher's version](https://academic.oup.com/nar/article/53/11/gkaf469/8158033) King, E. M.; Engel, M. C.; Martin, C.; Sunol, A. M.; Zhu, Q.-Z.; Schoenholz, S. S.; Manoharan, V. N.; Brenner, M. P. [Inferring Interaction Potentials from Stochastic Particle Trajectories](/publication/inferring-interaction-potentials-stochastic-particle-trajectories). *Physical Review Research* **2025**, *7* (2). https://doi.org/10.1103/PhysRevResearch.7.023075. King, E. M.; Engel, M. C.; Martin, C.; Sunol, A. M.; Zhu, Q.-Z.; Schoenholz, S. S.; Manoharan, V. N.; Brenner, M. P. [Inferring Interaction Potentials from Stochastic Particle Trajectories](/publication/inferring-interaction-potentials-stochastic-particle-trajectories). *Physical Review Research* **2025**, *7* (2). https://doi.org/10.1103/PhysRevResearch.7.023075. - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's version](https://link.aps.org/doi/10.1103/PhysRevResearch.7.023075) Accurate interaction potentials between microscopic components such as colloidal particles or cells are crucial to understanding a range of processes, including colloidal crystallization, bacterial colony formation, and cancer metastasis. Even in systems... - [ descriptionPublisher's version](https://link.aps.org/doi/10.1103/PhysRevResearch.7.023075) Paine, A. W.; Hagan, M. F.; Manoharan, V. N. [Disassembly of Virus-Like Particles and the Stabilizing Role of the Nucleic Acid Cargo](/publication/disassembly-virus-particles-and-stabilizing-role-nucleic-acid-cargo). *The Journal of Physical Chemistry B* **2025**, *129* (5). https://doi.org/10.1021/acs.jpcb.4c07215. Paine, A. W.; Hagan, M. F.; Manoharan, V. N. [Disassembly of Virus-Like Particles and the Stabilizing Role of the Nucleic Acid Cargo](/publication/disassembly-virus-particles-and-stabilizing-role-nucleic-acid-cargo). *The Journal of Physical Chemistry B* **2025**, *129* (5). https://doi.org/10.1021/acs.jpcb.4c07215. - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's version](https://pubs.acs.org/doi/10.1021/acs.jpcb.4c07215) In many simple viruses and virus-like particles, the protein capsid self-assembles around a nucleic-acid genome. Although the assembly process has been studied in detail, relatively little is known about how the capsid disassembles, a potentially... - [ descriptionPublisher's version](https://pubs.acs.org/doi/10.1021/acs.jpcb.4c07215) Sun, J. H.; Zhang, G. H.; Plummer, A.; Martin, C.; Tanjeem, N.; Nelson, D.; Manoharan, V. N. [Colloidal Crystallization on Cones](/publication/colloidal-crystallization-cones). *Physical Review Letters* **2025**, *134* (1). https://doi.org/10.1103/PhysRevLett.134.018201. Sun, J. H.; Zhang, G. H.; Plummer, A.; Martin, C.; Tanjeem, N.; Nelson, D.; Manoharan, V. N. [Colloidal Crystallization on Cones](/publication/colloidal-crystallization-cones). *Physical Review Letters* **2025**, *134* (1). https://doi.org/10.1103/PhysRevLett.134.018201. - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's version](https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.134.018201) We explore experimentally how a conical surface frustrates the growth of colloidal crystals. Whereas crystals on a cylinder can form perfect commensurate bands, crystals on a cone tend to form tilt grain boundaries with misorientation angles set by the... - [ descriptionPublisher's version](https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.134.018201) ### 2024 Sherif, A.; Faaborg, M. W.; Zeng, C.; Brenner, M. P.; Manoharan, V. N. [Braiding, Twisting, and Weaving Microscale Fibers With Capillary Forces](/publication/braiding-twisting-and-weaving-microscale-fibers-capillary-forces). *Soft Matter* **2024**, *20* (15). https://doi.org/10.1039/D3SM01732J. Sherif, A.; Faaborg, M. W.; Zeng, C.; Brenner, M. P.; Manoharan, V. N. [Braiding, Twisting, and Weaving Microscale Fibers With Capillary Forces](/publication/braiding-twisting-and-weaving-microscale-fibers-capillary-forces). *Soft Matter* **2024**, *20* (15). https://doi.org/10.1039/D3SM01732J. - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's version](https://pubs.rsc.org/en/content/articlelanding/2024/sm/d3sm01732j) Soft materials made from braided or woven microscale fibers can display unique properties that can be exploited in electromagnetic, mechanical, and biomedical applications. These properties depend on the topology of the braids or weaves—that is, the order... - [ descriptionPublisher's version](https://pubs.rsc.org/en/content/articlelanding/2024/sm/d3sm01732j) Williams, L. A.; Neophytou, A.; Garmann, R. F.; Chakrabarti, R.; Manoharan, V. N. [Effect of Coat-Protein Concentration on the Self-Assembly of Bacteriophage MS2 Capsids Around RNA](/publications/effect-coat-protein-concentration-self-assembly-bacteriophage-ms2-capsids). *Nanoscale* **2024**. Williams, L. A.; Neophytou, A.; Garmann, R. F.; Chakrabarti, R.; Manoharan, V. N. [Effect of Coat-Protein Concentration on the Self-Assembly of Bacteriophage MS2 Capsids Around RNA](/publications/effect-coat-protein-concentration-self-assembly-bacteriophage-ms2-capsids). *Nanoscale* **2024**. - [ descriptionPublisher's Version](https://pubs.rsc.org/en/content/articlelanding/2024/nr/d3nr03292b/unauth) - [ descriptionPublisher's Version](https://pubs.rsc.org/en/content/articlelanding/2024/nr/d3nr03292b/unauth) ### 2023 Wit, X. M.; Paine, A. W.; Martin, C.; Goldfain, A. M.; Garmann, R. F.; Manoharan, V. N. [Precise Characterization of Nanometer-Scale Systems Using Interferometric Scattering Microscopy and Bayesian Analysis](/publications/precise-characterization-nanometer-scale-systems-using-interferometric). *Applied Optics* **2023**, *62* (27), 7205-7215. Wit, X. M.; Paine, A. W.; Martin, C.; Goldfain, A. M.; Garmann, R. F.; Manoharan, V. N. [Precise Characterization of Nanometer-Scale Systems Using Interferometric Scattering Microscopy and Bayesian Analysis](/publications/precise-characterization-nanometer-scale-systems-using-interferometric). *Applied Optics* **2023**, *62* (27), 7205-7215. - [ descriptionPublisher's Version](https://opg.optica.org/ao/abstract.cfm?uri=ao-62-27-7205) - [ descriptionPublisher's Version](https://opg.optica.org/ao/abstract.cfm?uri=ao-62-27-7205) Sun, J. H.; Plummer, A.; Zhang, G. H.; Nelson, D.; Manoharan, V. N. [Geometric Frustration of Hard-Disk Packings on Cones](/publications/geometric-frustration-hard-disk-packings-cones). *Physical Review E* **2023**, *108* (5), 054608. Sun, J. H.; Plummer, A.; Zhang, G. H.; Nelson, D.; Manoharan, V. N. [Geometric Frustration of Hard-Disk Packings on Cones](/publications/geometric-frustration-hard-disk-packings-cones). *Physical Review E* **2023**, *108* (5), 054608. - [ descriptionPublisher's Version](https://journals.aps.org/pre/abstract/10.1103/PhysRevE.108.054608) - [ descriptionPublisher's Version](https://journals.aps.org/pre/abstract/10.1103/PhysRevE.108.054608) ### 2022 Zeng, C.; Faaborg, M. W.; Sherif, A.; Falk, M. J.; Hajian, R.; Xiao, M.; Hartig, K.; Bar-Sinai, Y.; Brenner, M. [3D-Printed Machines That Manipulate Microscopic Objects Using Capillary Forces](/publications/3d-printed-machines-manipulate-microscopic-objects-using-capillary-forces). *Nature* **2022**, *611*, 68-73. Zeng, C.; Faaborg, M. W.; Sherif, A.; Falk, M. J.; Hajian, R.; Xiao, M.; Hartig, K.; Bar-Sinai, Y.; Brenner, M. [3D-Printed Machines That Manipulate Microscopic Objects Using Capillary Forces](/publications/3d-printed-machines-manipulate-microscopic-objects-using-capillary-forces). *Nature* **2022**, *611*, 68-73. - [ descriptionPublisher's Version](https://www.nature.com/articles/s41586-022-05234-7) - [ descriptionPublisher's Version](https://www.nature.com/articles/s41586-022-05234-7) Xiao, M.; Mao, J.; Kollosche, M.; Hwang, V.; Clarke, D.; Manoharan, V. N. [Voltage-Tunable Elastomer Composites That Use Shape Instabilities for Rapid Structural Color Changes](/publications/voltage-tunable-elastomer-composites-use-shape-instabilities-rapid-structural). *Materials Horizons* **2022**, *9* (7), 1954-1961. Xiao, M.; Mao, J.; Kollosche, M.; Hwang, V.; Clarke, D.; Manoharan, V. N. [Voltage-Tunable Elastomer Composites That Use Shape Instabilities for Rapid Structural Color Changes](/publications/voltage-tunable-elastomer-composites-use-shape-instabilities-rapid-structural). *Materials Horizons* **2022**, *9* (7), 1954-1961. - [ descriptionPublisher's Version](https://pubs.rsc.org/en/content/articlelanding/2022/mh/d2mh00374k/unauth) - [ descriptionPublisher's Version](https://pubs.rsc.org/en/content/articlelanding/2022/mh/d2mh00374k/unauth) - Previous page chevron\_left - [1](?page=0 "Current page") - [2](?page=1 "Go to page 2") - [3](?page=2 "Go to page 3") - [ Last page 10 ](?page=9 "Go to last page") - [ Next page chevron\_right ](?page=1 "Go to next page")